Many thanks for this great starter theme!!!

One question with regards to javascript loading in the footer:

quick version:
How can I load ALL javascript into the footer, such as javascript from plugins?

verbose version:
For a site that I am building right now, I am creating a custom child theme of the boilerplate theme. The site relies heavily on a third party plugin. This plugin loads the latest jQuery as well as a bunch of other js into the header.

Do I have to hack the plugin to get all of my javascript queued up nicely in the footer, or is there a more intelligent way of doing this?

Thank you for your time, effort and talent.